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    LOC4346507 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346507, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346507
    Gene description
    serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
    Locus tag
    OSNPB_090249700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1116_H10.3; OJ1695_A02.24
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    Genomic context

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    See LOC4346507 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8104472..8110820, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3758039..3764491, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene CASP-like protein 5B3 Neighboring gene protein RDM16 Neighboring gene ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like Neighboring gene disease resistance protein Pik-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
    Names
    Os09g0249700
    phosphatase 2A regulatory A subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      8104472..8110820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756619.3 → XP_015612105.1  serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X2

      Conserved Domains (2) summary
      COG1413
      Location:210 → 419
      HEAT; HEAT repeat [General function prediction only]
      sd00044
      Location:243 → 267
      HEAT; HEAT repeat [structural motif]

    2. XM_015756618.3 → XP_015612104.1  serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1

      UniProtKB/TrEMBL
      A3BWG1, B8BD97, Q6K4K9, Q9S7C5
      Conserved Domains (2) summary
      COG1413
      Location:210 → 419
      HEAT; HEAT repeat [General function prediction only]
      sd00044
      Location:243 → 267
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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