LOC4334537 magnesium-chelatase subunit ChlD, chloroplastic-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4334537
Gene description: magnesium-chelatase subunit ChlD, chloroplastic-like
Locus tag: OSNPB_030811100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: CHL1; CHLD; OsJ_13066
Expression: Broad expression in leaves before flowering (RPKM 48.5), flowers (RPKM 22.3) and 4 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (34928009..34934773)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (33955203..33961949)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

N-terminus plus linker domain of rice CHLD (CHLDN + L) mediates protein interactions. CHLDN + L maintains most of the Mg-chelatase activity in vitro.
Title: N-terminus plus linker domain of Mg-chelatase D subunit is essential for Mg-chelatase activity in Oryza sativa.
Data suggest that phosphorylation by ChlI2 at a conserved 1-N-histidine residue (H641) in the C-terminal integrin I domain of ChlD stimulates magnesium chelatase activity of the complex, stabilizes the enzyme complex, and thus up-regulates chlorophyll synthesis. (ChlI2 = magnesium chelatase subunit I; ChlD = magnesium-chelatase subunit ChlD)
Title: 1-N-histidine phosphorylation of ChlD by the AAA(+) ChlI2 stimulates magnesium chelatase activity in chlorophyll synthesis.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed
enables magnesium chelatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in chlorophyll biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: magnesium-chelatase subunit ChlD, chloroplastic

Names: LOC_Os03g59640; Mg-chelatase subunit D; Mg-protoporphyrin IX chelatase subunit ChlD; OSJNBa0028F23.2; OSJNBb0033J23.6; Protein CHLORINA 1; magnesium chelatase subunit D

NP_001389237.1

EC 6.6.1.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001402308.1 → NP_001389237.1 magnesium-chelatase subunit ChlD, chloroplastic

Status: VALIDATED

Source sequence(s)

EF065605

UniProtKB/Swiss-Prot

A0A0P0W4J4, B8AMB8, Q6ATS0, Q7XZG7