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    LOC4327685 trafficking protein particle complex subunit 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327685, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327685
    Gene description
    trafficking protein particle complex subunit 5
    Locus tag
    OSNPB_010708600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0456F08.1; SPP30-like
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    Genomic context

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    See LOC4327685 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30030919..30035371)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29442645..29447122)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene casein kinase 1-like protein 2 Neighboring gene probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 Neighboring gene protein IQ-DOMAIN 6 Neighboring gene mitochondrial carrier protein CoAc1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TRAPPI protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of TRAPPII protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of TRAPPIII protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit 5
    Names
    Os01g0708600
    P0510F09.29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406412.1 → NP_001393341.1  trafficking protein particle complex subunit 5

      Status: VALIDATED

      Source sequence(s)
      AK111377, AP014957, CI652718
      UniProtKB/TrEMBL
      A0A0P0V763, B8A8C6, Q5N9C8, Q5NAJ2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30030919..30035371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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