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    LOC4350528 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350528, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350528
    Gene description
    6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic-like
    Locus tag
    OSNPB_110484500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    6PGDH2; G6PGH2; OsG6PGH2
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (18983423..18985312)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (17064401..17066285)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene DNA replication licensing factor MCM2-like Neighboring gene bifunctional dihydrofolate reductase-thymidylate synthase Neighboring gene uncharacterized LOC107279510 Neighboring gene uncharacterized LOC107277424 Neighboring gene uncharacterized LOC4350529

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphogluconate 2-dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphogluconate dehydrogenase (decarboxylating) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in D-gluconate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt, oxidative branch IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic
    Names
    LOC_Os11g29400
    cytosolic 6-phosphogluconate dehydrogenase
    phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) 2, chloroplastic
    NP_001391393.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404464.2 → NP_001391393.1  6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK071592, AP014967, CI246007
      UniProtKB/Swiss-Prot
      A0A0P0Y2I7, Q2R480, Q7Y248
      UniProtKB/TrEMBL
      B9GAQ3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      18983423..18985312
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2R480.1 GenPept UniProtKB/Swiss-Prot:Q2R480

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials