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    LOC4328925 protein THYLAKOID RHODANESE-LIKE, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328925, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328925
    Gene description
    protein THYLAKOID RHODANESE-LIKE, chloroplastic-like
    Locus tag
    OSNPB_020257300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 49.9), flowers (RPKM 41.1) and 5 other tissues See more
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    Genomic context

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    See LOC4328925 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (8898674..8902026)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8872994..8876415)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene basic blue protein Neighboring gene uncharacterized LOC4328924 Neighboring gene transcription factor SPEECHLESS Neighboring gene uncharacterized LOC107276690

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein THYLAKOID RHODANESE-LIKE, chloroplastic-like
    Names
    Os02g0257300
    P0613F08.22
    hydroxyproline-rich glycoprotein-like
    rhodanese-like domain-containing protein 4, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      8898674..8902026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768014.3 → XP_015623500.1  protein THYLAKOID RHODANESE-LIKE, chloroplastic-like

      UniProtKB/Swiss-Prot
      A2X345, Q6ETQ7
      Conserved Domains (2) summary
      PLN03209
      Location:382 → 468
      PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
      cd00158
      Location:138 → 232
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein
    Heading Accession and Version

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