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    LOC4348759 N6-adenosine-methyltransferase non-catalytic subunit MTB [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348759, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348759
    Gene description
    N6-adenosine-methyltransferase non-catalytic subunit MTB
    Locus tag
    OSNPB_100447600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348759 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (16866421..16873043)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (16201242..16207981)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353653 Neighboring gene uncharacterized LOC4348757 Neighboring gene silicon efflux transporter LSI2-like Neighboring gene uncharacterized LOC136353485 Neighboring gene UPF0481 protein At3g47200

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA N6-methyladenosine methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N6-adenosine-methyltransferase non-catalytic subunit MTB
    Names
    Os10g0447600
    methyltransferase-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      16866421..16873043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020834.2 → XP_025876619.1  N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X1

      Conserved Domains (1) summary
      pfam05063
      Location:725 → 902
      MT-A70

    2. XM_015759054.3 → XP_015614540.1  N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X2

      UniProtKB/TrEMBL
      A0A5S6RD03, Q0IXC8, Q337R2
      Conserved Domains (1) summary
      cl01947
      Location:725 → 901
      MT-A70

    3. XM_026020833.2 → XP_025876618.1  N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X1

      Conserved Domains (1) summary
      pfam05063
      Location:725 → 902
      MT-A70

    4. XM_066304774.1 → XP_066160871.1  N6-adenosine-methyltransferase non-catalytic subunit MTB isoform X1

    Nucleotide Protein
    Heading Accession and Version

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