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    LOC4325041 DNA repair protein recA homolog 3, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325041, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325041
    Gene description
    DNA repair protein recA homolog 3, mitochondrial
    Locus tag
    OSNPB_010901200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1065G12.7; P0551C06.5
    Expression
    Ubiquitous expression in flower buds (RPKM 26.1), mature seeds (RPKM 23.9) and 6 other tissues See more
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    Genomic context

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    See LOC4325041 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39871856..39876947, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39238851..39243981, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH128 Neighboring gene uncharacterized LOC4325039 Neighboring gene U-box domain-containing protein 45 Neighboring gene GDP-L-galactose phosphorylase 2 Neighboring gene transfer RNA isoleucine (anticodon AAU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein recA homolog 3, mitochondrial
    Names
    Os01g0901200
    P0035F12.24
    putative recA protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39871856..39876947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756709.3 → XP_015612195.1  DNA repair protein recA homolog 3, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0VBR6, B9EVE4, Q5N6Y9, Q7F1X7
      Conserved Domains (1) summary
      PRK09354
      Location:63 → 411
      recA; recombinase A; Provisional
    Nucleotide Protein
    Heading Accession and Version

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