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    LOC4342758 KH domain-containing protein SPIN1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342758, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342758
    Gene description
    KH domain-containing protein SPIN1-like
    Locus tag
    OSNPB_070227400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342758 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (7200254..7205927)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (7120706..7126478)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich splicing factor SR45 Neighboring gene small nucleolar RNA snoR114 Neighboring gene probable serine/threonine-protein kinase PBL21 Neighboring gene uncharacterized LOC136357357 Neighboring gene uncharacterized LOC136357358

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    KH domain-containing protein SPIN1-like
    Names
    KH domain-like protein
    OSJNBa0066H10.133
    Os07g0227400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      7200254..7205927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789137.3 → XP_015644623.1  KH domain-containing protein SPIN1-like

      UniProtKB/TrEMBL
      A3BHY3, B8B8H3, Q0D7P3, Q8H2M0
      Conserved Domains (2) summary
      pfam16544
      Location:24 → 74
      STAR_dimer; Homodimerization region of STAR domain protein
      cl00098
      Location:138 → 238
      KH-I; K homology (KH) RNA-binding domain, type I
    Nucleotide Protein
    Heading Accession and Version

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