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    LOC4350215 ankyrin repeat-containing protein NPR4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350215, updated on 1-Aug-2024

    Summary

    Gene symbol
    LOC4350215
    Gene description
    ankyrin repeat-containing protein NPR4-like
    Locus tag
    OSNPB_110252400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 292.1), flower buds (RPKM 141.3) and 1 other tissue See more
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    Genomic context

    See LOC4350215 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8631500..8635123, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (8198317..8201968, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat-containing protein At5g02620 Neighboring gene uncharacterized LOC136354087 Neighboring gene uncharacterized LOC136354137 Neighboring gene uncharacterized LOC9272646

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    ankyrin repeat-containing protein NPR4-like
    Names
    Os11g0252400
    ankyrin repeat-containing protein At3g12360

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      8631500..8635123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762537.3XP_015618023.1  ankyrin repeat-containing protein NPR4-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y0Q7, B9FL08, Q53N02
      Conserved Domains (4) summary
      COG0666
      Location:80299
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:246275
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:249346
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:409516
      PGG; Domain of unknown function
    2. XM_015762539.3XP_015618025.1  ankyrin repeat-containing protein NPR4-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y0Q7, B9FL08, Q53N02
      Conserved Domains (4) summary
      COG0666
      Location:80299
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:246275
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:249346
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:409516
      PGG; Domain of unknown function
    3. XM_015762538.3XP_015618024.1  ankyrin repeat-containing protein NPR4-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y0Q7, B9FL08, Q53N02
      Conserved Domains (4) summary
      COG0666
      Location:80299
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:246275
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:249346
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:409516
      PGG; Domain of unknown function
    4. XM_066305723.1XP_066161820.1  ankyrin repeat-containing protein NPR4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y0Q7