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    LOC4348999 vacuolar-sorting protein BRO1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348999, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348999
    Gene description
    vacuolar-sorting protein BRO1
    Locus tag
    OSNPB_100495300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348999 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19528667..19534130, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18837745..18843228, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene protein Rf1, mitochondrial Neighboring gene protein Rf1, mitochondrial-like Neighboring gene protein Rf1, mitochondrial Neighboring gene uncharacterized LOC112936585

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar-sorting protein BRO1
    Names
    ALG-2 interacting protein X
    Os10g0495300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19528667..19534130 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758103.3 → XP_015613589.1  vacuolar-sorting protein BRO1

      UniProtKB/TrEMBL
      A0A0P0XVQ5, A2Z8X6, Q8LNU2
      Conserved Domains (4) summary
      cd09238
      Location:373 → 709
      V_Alix_like_1; Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily
      cd09246
      Location:8 → 367
      BRO1_Alix_like_1; Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily
      PRK14086
      Location:742 → 851
      dnaA; chromosomal replication initiator protein DnaA
      NF033761
      Location:769 → 819
      gliding_GltJ; adventurous gliding motility protein GltJ
    Nucleotide Protein
    Heading Accession and Version

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