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    LOC4326247 transcription factor GTE3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326247, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326247
    Gene description
    transcription factor GTE3, chloroplastic
    Locus tag
    OSNPB_010648700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0047B08.5; OJ1316_H05.21
    Expression
    Broad expression in mature seeds (RPKM 6.2), milk grains (RPKM 2.8) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26754767..26758853, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26173185..26177332, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 7-like Neighboring gene probable receptor-like protein kinase At5g20050 Neighboring gene uncharacterized LOC4326248 Neighboring gene malate dehydrogenase, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor GTE3, chloroplastic
    Names
    Os01g0648700
    PSTVd RNA-biding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      26754767..26758853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779795.3 → XP_015635281.1  transcription factor GTE3, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0V5Y8, A0A5S6RBE5, B9EYB9, Q0JKU9, Q5VQE7
      Conserved Domains (2) summary
      pfam17035
      Location:160 → 223
      BET; Bromodomain extra-terminal - transcription regulation
      cl02556
      Location:52 → 150
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    Nucleotide Protein
    Heading Accession and Version

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