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    LOC4350963 protein SPIRAL1-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350963, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350963
    Gene description
    protein SPIRAL1-like 2
    Locus tag
    OSNPB_110629400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_34517
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    Genomic context

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    See LOC4350963 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (26604164..26605396, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (24651997..24653177, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 26A Neighboring gene E3 ubiquitin-protein ligase At3g02290 Neighboring gene phosphoserine phosphatase, chloroplastic Neighboring gene disease resistance protein RGA5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cortical microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cortical microtubule, transverse to long axis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SPIRAL1-like 2
    Names
    LOC_Os11g41150

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423221.1 → NP_001410150.1  protein SPIRAL1-like 2

      Status: VALIDATED

      Source sequence(s)
      AU091687, CI296175
      UniProtKB/Swiss-Prot
      A0A0P0Y4T6, Q2R0W8
      UniProtKB/TrEMBL
      B8BLF4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      26604164..26605396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2R0W8.1 GenPept UniProtKB/Swiss-Prot:Q2R0W8

    Gene LinkOut

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