U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4336196 MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336196, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4336196
    Gene description
    MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1
    Locus tag
    OSNPB_040482800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 86.3), flower buds (RPKM 36.7) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4336196 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24630346..24634765, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24133996..24138559, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271760 Neighboring gene mitochondrial inner membrane protease ATP23 Neighboring gene uncharacterized LOC4336197 Neighboring gene BAG family molecular chaperone regulator 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1
    Names
    Os04g0482800
    programmed cell death protein 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      24630346..24634765 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779892.3 → XP_015635378.1  MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WBM0, A2XUS0, Q01JV4, Q0JCA4
      Conserved Domains (2) summary
      smart00544
      Location:85 → 196
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      pfam02847
      Location:250 → 360
      MA3; MA3 domain

    2. XM_015779891.3 → XP_015635377.1  MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1 isoform X1

      UniProtKB/TrEMBL
      A2XUS0, A3AUY9, Q01JV4, Q7XUP3
      Conserved Domains (2) summary
      smart00544
      Location:86 → 197
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      pfam02847
      Location:251 → 361
      MA3; MA3 domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials