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    LOC4352050 nuclear intron maturase 1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352050, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352050
    Gene description
    nuclear intron maturase 1, mitochondrial
    Locus tag
    OSNPB_120407200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os12g0407200
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    Genomic context

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    See LOC4352050 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (12742634..12745235, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (12316003..12318385, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein AGL61 Neighboring gene uncharacterized LOC136354706 Neighboring gene agamous-like MADS-box protein AGL62 Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear intron maturase 1, mitochondrial
    Names
    Os12g0407300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      12742634..12745235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022103.2 → XP_025877888.1  nuclear intron maturase 1, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0Y9D7, A0A8J8Y4B6, B8BP87, B9GCS6
      Conserved Domains (2) summary
      cd01651
      Location:158 → 443
      RT_G2_intron; Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with ...
      pfam01348
      Location:526 → 578
      Intron_maturas2; Type II intron maturase
    Nucleotide Protein
    Heading Accession and Version

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