U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4343672 COMPASS-like H3K4 histone methylase component WDR5B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343672, updated on 17-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4343672
    Gene description
    COMPASS-like H3K4 histone methylase component WDR5B
    Locus tag
    OSNPB_070572000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1121_A05.20
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4343672 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23321352..23323854)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23091881..23094425)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene organic cation/carnitine transporter 7 Neighboring gene protein YABBY 7-like Neighboring gene pre-mRNA-splicing factor 18 Neighboring gene amine oxidase [copper-containing] alpha 2, peroxisomal Neighboring gene uncharacterized LOC4343674

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    COMPASS-like H3K4 histone methylase component WDR5B
    Names
    Os07g0572000
    WD domain, G-beta repeat domain-containing protein
    putative WD repeat domain 5 protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23321352..23323854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789425.3 → XP_015644911.1  COMPASS-like H3K4 histone methylase component WDR5B

      UniProtKB/TrEMBL
      A2YMV0, A3BLC9, Q6YTU7
      Conserved Domains (3) summary
      COG2319
      Location:14 → 334
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:18 → 334
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:28 → 65
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials