U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC9269603 C2 and GRAM domain-containing protein At1g03370 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269603, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9269603
    Gene description
    C2 and GRAM domain-containing protein At1g03370
    Locus tag
    OSNPB_060607900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    nop; Osnop
    Expression
    Biased expression in flower buds (RPKM 3.8), flowers (RPKM 2.8) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9269603 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25048985..25055089)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24186970..24193129)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 26 Neighboring gene 26S proteasome regulatory subunit S10B homolog B Neighboring gene uncharacterized LOC107281452 Neighboring gene uncharacterized LOC9268616 Neighboring gene transfer RNA leucine (anticodon AAG)

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein. Jiang SY, et al. Plant Mol Biol, 2005 Apr. PMID 15952069
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    C2 and GRAM domain-containing protein At1g03370
    Names
    C2 domain-containing protein-like
    Os06g0607900
    P0556B08.10
    no pollen

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25048985..25055089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788642.3 → XP_015644128.1  C2 and GRAM domain-containing protein At1g03370 isoform X1

      UniProtKB/TrEMBL
      B9FU30, C7J4A3, Q66VB0
      Conserved Domains (4) summary
      cd00030
      Location:606 → 705
      C2; C2 domain
      pfam00168
      Location:23 → 125
      C2; C2 domain
      pfam16016
      Location:321 → 470
      DUF4782; Domain of unknown function (DUF4782)
      cl17171
      Location:767 → 879
      PH-like; Pleckstrin homology-like domain

    2. XM_066311253.1 → XP_066167350.1  C2 and GRAM domain-containing protein At1g03370 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials