U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4341942 xyloglucan endotransglucosylase protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341942, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4341942
    Gene description
    xyloglucan endotransglucosylase protein 7
    Locus tag
    OSNPB_060696600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4341942 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30011561..30013235)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29144869..29146562)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 22 Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene uncharacterized LOC9271654 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 25

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in cell wall IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    xyloglucan endotransglucosylase protein 7
    Names
    Os06g0696600
    P0028E05.20
    P0622F03.46
    putative xyloglucan endotransglycosylase

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30011561..30013235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785680.3XP_015641166.1  xyloglucan endotransglucosylase protein 7

      UniProtKB/TrEMBL
      A0A0P0X0L1, Q0D9V2, Q5Z6H0
      Conserved Domains (1) summary
      cd02176
      Location:28285
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16