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    LOC4351929 3-hydroxyisobutyryl-CoA hydrolase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351929, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351929
    Gene description
    3-hydroxyisobutyryl-CoA hydrolase 1
    Locus tag
    OSNPB_120264500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 65.5), roots after flowering (RPKM 64.3) and 6 other tissues See more
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    Genomic context

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    See LOC4351929 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (9411165..9425838)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (9350844..9365580)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene isoflavone reductase homolog Neighboring gene uncharacterized LOC9269561 Neighboring gene pinoresinol reductase 1-like Neighboring gene uncharacterized LOC107278356 Neighboring gene isoflavone reductase homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxyisobutyryl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in valine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-hydroxyisobutyryl-CoA hydrolase 1
    Names
    Os12g0264500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      9411165..9425838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306446.1 → XP_066162543.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

    2. XM_066306448.1 → XP_066162545.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

    3. XM_066306449.1 → XP_066162546.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

    4. XM_015764212.3 → XP_015619698.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

      UniProtKB/TrEMBL
      H2KWY2
      Conserved Domains (1) summary
      cl23717
      Location:2 → 380
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

    5. XM_015764218.3 → XP_015619704.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X6

      UniProtKB/TrEMBL
      H2KWY2, Q2QUG2
      Conserved Domains (2) summary
      PRK05617
      Location:4 → 346
      PRK05617; 3-hydroxyisobutyryl-CoA hydrolase; Provisional
      cl23717
      Location:2 → 373
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

    6. XM_066306444.1 → XP_066162541.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

    7. XM_066306450.1 → XP_066162547.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X6

      UniProtKB/TrEMBL
      Q2QUG2

    8. XM_066306447.1 → XP_066162544.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

    9. XM_066306451.1 → XP_066162548.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X6

      UniProtKB/TrEMBL
      Q2QUG2

    10. XM_015764207.3 → XP_015619693.2  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X1

    11. XM_015764208.3 → XP_015619694.2  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X2

    12. XM_066306445.1 → XP_066162542.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

    13. XM_015764219.3 → XP_015619705.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X6

      UniProtKB/TrEMBL
      H2KWY2, Q2QUG2
      Conserved Domains (2) summary
      PRK05617
      Location:4 → 346
      PRK05617; 3-hydroxyisobutyryl-CoA hydrolase; Provisional
      cl23717
      Location:2 → 373
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

    14. XM_015764217.3 → XP_015619703.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X5

      UniProtKB/TrEMBL
      B9FN90, H2KWY2
      Conserved Domains (1) summary
      cl23717
      Location:4 → 378
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

    15. XM_015764211.3 → XP_015619697.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X3

      UniProtKB/TrEMBL
      H2KWY2
      Conserved Domains (2) summary
      PRK05617
      Location:5 → 358
      PRK05617; 3-hydroxyisobutyryl-CoA hydrolase; Provisional
      cl23717
      Location:4 → 385
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

    RNA

    1. XR_010738516.1 RNA Sequence

    2. XR_001542082.3 RNA Sequence

    3. XR_001542083.3 RNA Sequence

    4. XR_010738517.1 RNA Sequence

    5. XR_010738518.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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