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    LOC4347165 probable polygalacturonase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347165, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347165
    Gene description
    probable polygalacturonase
    Locus tag
    OSNPB_090439400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1344_B01.15
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    Genomic context

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    See LOC4347165 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20662818..20667161)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16282690..16287188)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable glucomannan 4-beta-mannosyltransferase 4 Neighboring gene protein TIFY 10c-like Neighboring gene photosystem I chlorophyll a/b-binding protein 6, chloroplastic Neighboring gene exocyst complex component EXO70A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable polygalacturonase
    Names
    Os09g0439400
    P0556H01.31
    putative polygalacturonase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      20662818..20667161
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756872.3 → XP_015612358.1  probable polygalacturonase isoform X1

      UniProtKB/TrEMBL
      B8BCE9, Q0J1H7, Q69P92
      Conserved Domains (1) summary
      COG5434
      Location:51 → 428
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

    2. XM_026020306.2 → XP_025876091.1  probable polygalacturonase isoform X2

      UniProtKB/TrEMBL
      B8BCE9
      Conserved Domains (1) summary
      cl26318
      Location:51 → 399
      Glyco_hydro_28; Glycosyl hydrolases family 28
    Nucleotide Protein
    Heading Accession and Version

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