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    LOC4334592 zinc finger protein ZAT12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334592, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334592
    Gene description
    zinc finger protein ZAT12
    Locus tag
    OSNPB_030820300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334592 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35397357..35398205)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34424030..34425104)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein ZAT12-like Neighboring gene NEDD8-activating enzyme E1 regulatory subunit AXR1 Neighboring gene zinc finger protein ZAT12 Neighboring gene actin-depolymerizing factor 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance. Huang J, et al. Biochim Biophys Acta, 2007 Apr. PMID 17434609
    2. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger protein ZAT12
    Names
    C2H2 transcription factor
    Os03g0820300
    zinc finger protein ZFP182

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      35397357..35398205
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773758.3 → XP_015629244.1  zinc finger protein ZAT12

      UniProtKB/TrEMBL
      A0A0N7KIA6, A2XNF5, Q0DMA6, Q84T96
      Conserved Domains (1) summary
      pfam13912
      Location:109 → 134
      zf-C2H2_6; C2H2-type zinc finger
    Nucleotide Protein
    Heading Accession and Version

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