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    LOC4326963 protein LAX PANICLE 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326963, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326963
    Gene description
    protein LAX PANICLE 2-like
    Locus tag
    OSNPB_010928400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326963 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41387731..41394760, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40743362..40750992, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein SCD2 Neighboring gene uncharacterized LOC9272710 Neighboring gene long chain base biosynthesis protein 2b-like Neighboring gene long chain base biosynthesis protein 2c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LAX PANICLE 2-like
    Names
    OSJNBa0052O12.9
    Os01g0928400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41387731..41394760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790476.3 → XP_015645962.1  protein LAX PANICLE 2-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0VC99, A0A5S6R7G4, B8A8V0, Q0JGD8, Q5JK41
      Conserved Domains (1) summary
      cl28922
      Location:194 → 241
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. XM_026022449.2 → XP_025878234.1  protein LAX PANICLE 2-like isoform X1

      Conserved Domains (1) summary
      cl28922
      Location:194 → 314
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version

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