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    LOC4324798 RING-H2 finger protein ATL72 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324798, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4324798
    Gene description
    RING-H2 finger protein ATL72
    Locus tag
    OSNPB_010866000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324798 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38132851..38133812)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37505135..37506198)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase PUB23 Neighboring gene dof zinc finger protein MNB1A Neighboring gene actin-7 Neighboring gene histone H3.2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING-H2 finger protein ATL72
    Names
    Os01g0866000
    P0505D12.29
    RING-H2 zinc finger protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38132851..38133812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787324.3 → XP_015642810.1  RING-H2 finger protein ATL72

      UniProtKB/TrEMBL
      A0A0P0VAU3, A0A9K3Y776, A2WXA9, Q0JHG2, Q5N9E0
      Conserved Domains (1) summary
      cl17238
      Location:144 → 187
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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