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    LOC4324006 rho GTPase-activating protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324006, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324006
    Gene description
    rho GTPase-activating protein 1
    Locus tag
    OSNPB_010967200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 1.7), flowers (RPKM 0.6) and 3 other tissues See more
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    Genomic context

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    See LOC4324006 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43306821..43308269)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42654135..42655907)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene polyol transporter 5 Neighboring gene uncharacterized LOC4324005 Neighboring gene uncharacterized LOC107281642 Neighboring gene uncharacterized LOC9266912

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rho GTPase-activating protein 1
    Names
    Os01g0967200
    P0458E05.37
    putative rac GTPase activating protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43306821..43308269
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763437.3 → XP_015618923.1  rho GTPase-activating protein 1

      UniProtKB/TrEMBL
      A0A0N7KEH0, A0A979HJK1, Q0JFQ6, Q8LHB9
      Conserved Domains (2) summary
      smart00324
      Location:87 → 247
      RhoGAP; GTPase-activator protein for Rho-like GTPases
      cd00132
      Location:25 → 65
      CRIB; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...
    Nucleotide Protein
    Heading Accession and Version

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