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    LOC4339558 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339558, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339558
    Gene description
    serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'
    Locus tag
    OSNPB_050555100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B'kappa
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    Genomic context

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    See LOC4339558 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27772225..27775239)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27602369..27605474)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276151 Neighboring gene uncharacterized LOC9270322 Neighboring gene photosynthetic NDH subunit of subcomplex B 3, chloroplastic Neighboring gene transfer RNA glutamic acid (anticodon CUC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like
    Names
    Os05g0555100
    protein phosphatase 2A B'kappa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      27772225..27775239
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782315.3 → XP_015637801.1  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like

      UniProtKB/Swiss-Prot
      Q0DG37, Q6I621, Q8L6I7
      UniProtKB/TrEMBL
      A2Y7A2
      Conserved Domains (2) summary
      pfam01603
      Location:81 → 484
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)
      cl27532
      Location:28 → 93
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)
    Nucleotide Protein
    Heading Accession and Version

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