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    LOC4325689 endo-1,4-beta-xylanase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325689, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325689
    Gene description
    endo-1,4-beta-xylanase 3
    Locus tag
    OSNPB_010134800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325689 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1914367..1917429, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1906716..1909764, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene delta(7)-sterol-C5(6)-desaturase Neighboring gene protein SAR DEFICIENT 1 Neighboring gene endo-1,4-beta-xylanase 1 Neighboring gene probable calcium-binding protein CML16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endo-1,4-beta-xylanase 3
    Names
    OSJNBa0083M16.32
    Os01g0134800
    anti-sigma-I factor RsgI6
    putative (1,4)-beta-xylan endohydrolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1914367..1917429 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786160.3 → XP_015641646.1  endo-1,4-beta-xylanase 3

      UniProtKB/TrEMBL
      A2WKC9
      Conserved Domains (1) summary
      smart00633
      Location:260 → 503
      Glyco_10; Glycosyl hydrolase family 10
    Nucleotide Protein
    Heading Accession and Version

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