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    LOC4338371 double-stranded RNA-binding protein 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338371, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338371
    Gene description
    double-stranded RNA-binding protein 3-like
    Locus tag
    OSNPB_050307400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DRB3
    Expression
    Ubiquitous expression in flower buds (RPKM 10.7), flowers (RPKM 9.3) and 6 other tissues See more
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    Genomic context

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    See LOC4338371 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (14019001..14025983, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (13939692..13946672, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356640 Neighboring gene uncharacterized LOC9272544 Neighboring gene pentatricopeptide repeat-containing protein At2g34400 Neighboring gene uncharacterized LOC136356542 Neighboring gene uncharacterized LOC136356463

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonuclease III activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    double-stranded RNA-binding protein 3
    Names
    LOC_Os05g24160
    dsRNA-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420325.1 → NP_001407254.1  double-stranded RNA-binding protein 3

      Status: VALIDATED

      Source sequence(s)
      AK072444
      UniProtKB/Swiss-Prot
      A0A0P0WKE9, Q0DJA3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      14019001..14025983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784952.3 → XP_015640438.1  double-stranded RNA-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      I2DBG3
      Conserved Domains (2) summary
      cd00048
      Location:36 → 102
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      pfam14538
      Location:367 → 431
      Raptor_N; Raptor N-terminal CASPase like domain

    2. XM_066310229.1 → XP_066166326.1  double-stranded RNA-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      I2DBG3

    3. XM_015784949.3 → XP_015640435.1  double-stranded RNA-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KTG4
      Conserved Domains (4) summary
      cd00048
      Location:36 → 102
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      sd00004
      Location:311 → 337
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:337 → 370
      PPR_1; PPR repeat
      pfam13041
      Location:341 → 388
      PPR_2; PPR repeat family

    4. XM_015784950.3 → XP_015640436.1  double-stranded RNA-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KTG4
      Conserved Domains (4) summary
      cd00048
      Location:36 → 102
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      sd00004
      Location:311 → 337
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:337 → 370
      PPR_1; PPR repeat
      pfam13041
      Location:341 → 388
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DJA3.1 GenPept UniProtKB/Swiss-Prot:Q0DJA3

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