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    LOC4323896 ABC transporter B family member 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323896, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4323896
    Gene description
    ABC transporter B family member 11
    Locus tag
    OSNPB_010695800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    mdr7
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    Genomic context

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    See LOC4323896 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29374613..29381547, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28786412..28793409, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene farnesyl pyrophosphate synthase Neighboring gene putative D-cysteine desulfhydrase 2, mitochondrial Neighboring gene ABC transporter B family member 4 Neighboring gene uncharacterized LOC136357334 Neighboring gene uncharacterized LOC136355007 Neighboring gene transcription repressor MYB5 Neighboring gene uncharacterized LOC9272654 Neighboring gene two-pore potassium channel 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type oligopeptide transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter B family member 11; ABC transporter B family member 5
    Names
    MDR-like ABC transporter
    Os01g0695800
    P-glycoprotein-like
    P0431H09.40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29374613..29381547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766599.3 → XP_015622085.1  ABC transporter B family member 11 isoform X2

      UniProtKB/TrEMBL
      B8A818, B9EYZ4, Q8GU72
      Conserved Domains (1) summary
      PTZ00265
      Location:29 → 1256
      PTZ00265; multidrug resistance protein (mdr1); Provisional

    2. XM_026020250.2 → XP_025876035.1  ABC transporter B family member 5 isoform X1

      UniProtKB/TrEMBL
      Q8GU72
      Conserved Domains (1) summary
      cl28181
      Location:29 → 1287
      AAA; ATPases associated with a variety of cellular activities
    Nucleotide Protein
    Heading Accession and Version

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