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    LOC4339961 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339961, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4339961
    Gene description
    pentatricopeptide repeat-containing protein At5g16420, mitochondrial
    Locus tag
    OSNPB_060125300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339961 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1519894..1524345)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1362842..1367436)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase subunit 8B, mitochondrial Neighboring gene FCS-Like Zinc finger 15 Neighboring gene oligopeptide transporter 7 Neighboring gene uncharacterized LOC112939269 Neighboring gene oligopeptide transporter 7 Neighboring gene pentatricopeptide repeat-containing protein At5g08510

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g16420, mitochondrial
    Names
    Os06g0125300
    P0425F02.25
    salt-inducible protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1519894..1524345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026215.2 → XP_025882000.1  pentatricopeptide repeat-containing protein At5g16420, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0WRL9, A0A0P0WS92, A2Y8R4, Q0DF10, Q9LWW3
      Conserved Domains (2) summary
      PLN03218
      Location:185 → 479
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:195 → 222
      PPR; PPR repeat [structural motif]

    2. XM_066311555.1 → XP_066167652.1  pentatricopeptide repeat-containing protein At5g16420, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0WRL9, A0A0P0WS92, A2Y8R4, Q0DF10, Q9LWW3

    3. XM_066311556.1 → XP_066167653.1  pentatricopeptide repeat-containing protein At5g16420, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0WRL9, A0A0P0WS92, A2Y8R4, Q0DF10, Q9LWW3
    Nucleotide Protein
    Heading Accession and Version

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