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    LOC4325981 ethylene-responsive transcription factor ERF118 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325981, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325981
    Gene description
    ethylene-responsive transcription factor ERF118
    Locus tag
    OSNPB_010131600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 293.7), leaves after flowering (RPKM 245.5) and 6 other tissues See more
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    Genomic context

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    See LOC4325981 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1754524..1756084)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1746407..1748446)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325978 Neighboring gene uncharacterized LOC4325980 Neighboring gene probable signal peptidase complex subunit 3 Neighboring gene Bowman-Birk type wound-induced proteinase inhibitor WIP1 Neighboring gene Bowman-Birk type wound-induced proteinase inhibitor WIP1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERF118
    Names
    AP2 domain containing protein
    AP2 domain-containing protein AP210
    Os01g0131600
    P0504H10.27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1754524..1756084
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761053.3 → XP_015616539.1  ethylene-responsive transcription factor ERF118

      UniProtKB/TrEMBL
      A2WKA5, B5AEK0, B7F530, B9EZC4, Q7XAB0, Q9LGB6, R9TI30
      Conserved Domains (1) summary
      cd00018
      Location:116 → 147
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
    Nucleotide Protein
    Heading Accession and Version

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