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    LOC4332781 protein pleiotropic regulatory locus 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332781, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4332781
    Gene description
    protein pleiotropic regulatory locus 1
    Locus tag
    OSNPB_030339100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332781 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12654618..12660596)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12599472..12605509)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transcription factor SCREAM2 Neighboring gene putative tRNA pseudouridine synthase Neighboring gene uncharacterized LOC9272395 Neighboring gene peroxidase 70

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein pleiotropic regulatory locus 1
    Names
    Os03g0339100
    WD domain, G-beta repeat domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      12654618..12660596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776406.3 → XP_015631892.1  protein pleiotropic regulatory locus 1

      UniProtKB/TrEMBL
      A0A5S6RA15, B8AP19, B9F8C7, Q0DS16, Q10LQ8
      Conserved Domains (2) summary
      cd00200
      Location:154 → 449
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:166 → 202
      7WD40; WD40 repeat [structural motif]

    2. XM_066308563.1 → XP_066164660.1  protein pleiotropic regulatory locus 1

      UniProtKB/TrEMBL
      A0A5S6RA15, B8AP19, B9F8C7, Q0DS16, Q10LQ8

    3. XM_015776405.3 → XP_015631891.1  protein pleiotropic regulatory locus 1

      UniProtKB/TrEMBL
      A0A5S6RA15, B8AP19, B9F8C7, Q0DS16, Q10LQ8
      Conserved Domains (2) summary
      cd00200
      Location:154 → 449
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:166 → 202
      7WD40; WD40 repeat [structural motif]

    4. XM_015776407.3 → XP_015631893.1  protein pleiotropic regulatory locus 1

      UniProtKB/TrEMBL
      A0A5S6RA15, B8AP19, B9F8C7, Q0DS16, Q10LQ8
      Conserved Domains (2) summary
      cd00200
      Location:154 → 449
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:166 → 202
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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