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    LOC4340970 nicotianamine aminotransferase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340970, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4340970
    Gene description
    nicotianamine aminotransferase 1-like
    Locus tag
    OSNPB_060345200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsNAAT4
    Expression
    Broad expression in mature seeds (RPKM 22.5), roots before flowering (RPKM 14.2) and 5 other tissues See more
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    Genomic context

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    See LOC4340970 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (14020242..14028804)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (13835574..13844011)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein CUP-SHAPED COTYLEDON 1 Neighboring gene uncharacterized LOC136357126 Neighboring gene small nucleolar RNA R71 Neighboring gene acyl-coenzyme A oxidase 4, peroxisomal Neighboring gene uncharacterized LOC9268034

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice. Inoue H, et al. Plant Mol Biol, 2008 Jan. PMID 18034312
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-tyrosine-2-oxoglutarate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tyrosine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nicotianamine aminotransferase 1-like
    Names
    OSJNBa0021N09.29-1
    OSJNBa0021N09.29-2
    Os06g0345200
    nicotianamine aminotransferase homolog
    putative nicotianamine aminotransferase A
    putative nicotianamine aminotransferase B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      14020242..14028804
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785622.3 → XP_015641108.1  nicotianamine aminotransferase 1-like isoform X1

      UniProtKB/TrEMBL
      B7F040, B8B1P8, Q0DCD0, Q5Z7R3
      Conserved Domains (2) summary
      cd00609
      Location:47 → 411
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN00145
      Location:1 → 422
      PLN00145; tyrosine/nicotianamine aminotransferase; Provisional

    2. XM_015785623.3 → XP_015641109.1  nicotianamine aminotransferase 1-like isoform X2

      UniProtKB/TrEMBL
      B8B1P8
      Conserved Domains (1) summary
      PLN00145
      Location:1 → 370
      PLN00145; tyrosine/nicotianamine aminotransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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