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    LOC4329897 transcription factor GTE9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329897, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329897
    Gene description
    transcription factor GTE9
    Locus tag
    OSNPB_020601800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1669_F01.4-1; OJ1669_F01.4-2; OJ1791_B03.42-1; OJ1791_B03.42-2
    Expression
    Ubiquitous expression in roots before flowering (RPKM 101.6), roots after flowering (RPKM 80.0) and 6 other tissues See more
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    Genomic context

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    See LOC4329897 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24031690..24036896, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23549174..23554393, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g04130, mitochondrial Neighboring gene uncharacterized LOC4329896 Neighboring gene uncharacterized LOC4329898 Neighboring gene cyclin-dependent kinase G-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor GTE9
    Names
    Os02g0601800
    kinase-like protein
    putative global transcription factor group E

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24031690..24036896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769920.3 → XP_015625406.1  transcription factor GTE9 isoform X2

      UniProtKB/TrEMBL
      B8AF14, B9F0X8, Q6K5G2
      Conserved Domains (2) summary
      cd05506
      Location:168 → 265
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
      pfam17035
      Location:321 → 388
      BET; Bromodomain extra-terminal - transcription regulation

    2. XM_015769919.3 → XP_015625405.1  transcription factor GTE9 isoform X1

      UniProtKB/TrEMBL
      B8AF14
      Conserved Domains (2) summary
      cd05506
      Location:168 → 265
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
      pfam17035
      Location:321 → 388
      BET; Bromodomain extra-terminal - transcription regulation
    Nucleotide Protein
    Heading Accession and Version

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