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    LOC4334173 uncharacterized LOC4334173 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334173, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4334173
    Gene description
    uncharacterized LOC4334173
    Locus tag
    OSNPB_030758400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 21.0), mature seeds (RPKM 16.5) and 6 other tissues See more
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    Genomic context

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    See LOC4334173 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32325163..32327976)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31354550..31357465)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic Neighboring gene cyclic nucleotide-gated ion channel 2 Neighboring gene early nodulin-like protein 16 Neighboring gene uncharacterized LOC4334175

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334173
    Names
    26S proteasome non-ATPase regulatory subunit 10
    Os03g0758400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      32325163..32327976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773218.2 → XP_015628704.1  uncharacterized protein LOC4334173

      UniProtKB/TrEMBL
      B8AK75, B9F5T1, Q9AUW0
      Conserved Domains (3) summary
      PTZ00322
      Location:25 → 115
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      PHA03095
      Location:72 → 240
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:94 → 125
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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