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    LOC4341487 26S proteasome regulatory subunit S10B homolog B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341487, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341487
    Gene description
    26S proteasome regulatory subunit S10B homolog B
    Locus tag
    OSNPB_060607800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsRPT4b; P0556B08.9
    Expression
    Ubiquitous expression in flower buds (RPKM 14.9), flowers (RPKM 12.7) and 6 other tissues See more
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    Genomic context

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    See LOC4341487 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25044506..25048425)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24182511..24186485)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341485 Neighboring gene ABC transporter G family member 26 Neighboring gene C2 and GRAM domain-containing protein At1g03370 Neighboring gene uncharacterized LOC107281452 Neighboring gene uncharacterized LOC9268616

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome-activating activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of RNA polymerase II transcription preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome regulatory subunit S10B homolog B
    Names
    26S protease regulatory subunit S10B homolog B
    26S proteasome regulatory particle triple-A ATPase subunit4b
    Os06g0607800
    P0029C06.33
    putative 26S proteasome regulatory particle triple-A ATPase subunit4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25044506..25048425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785901.2 → XP_015641387.1  26S proteasome regulatory subunit S10B homolog B

      UniProtKB/TrEMBL
      A3BDF5, B8B4N6, Q0DB25, Q69Q32
      Conserved Domains (1) summary
      COG1222
      Location:20 → 394
      RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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