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    LOC4346529 uncharacterized LOC4346529 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346529, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4346529
    Gene description
    uncharacterized LOC4346529
    Locus tag
    OSNPB_090255400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346529 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8522257..8551211, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (4201058..4204437, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET7b-like Neighboring gene beta-fructofuranosidase, insoluble isoenzyme 7-like Neighboring gene putative cysteine proteinase inhibitor 11 Neighboring gene uncharacterized LOC136351247 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene beta-fructofuranosidase, insoluble isoenzyme 7-like Neighboring gene uncharacterized LOC136351748 Neighboring gene GATA transcription factor 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables indole-3-glycerol-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoribosylanthranilate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tryptophan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346529
    Names
    OSJNBb0066C12.38-1
    OSJNBb0066C12.38-2
    Os09g0255400
    indole-3-glycerol phosphate synthase
    putative indole-3-glycerol phosphate synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      8522257..8551211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757087.3 → XP_015612573.1  uncharacterized protein LOC4346529

      UniProtKB/TrEMBL
      A0A0P0XK02, B8BDF0, Q0J358, Q6K307
      Conserved Domains (1) summary
      PLN02460
      Location:46 → 379
      PLN02460; indole-3-glycerol-phosphate synthase

    RNA

    1. XR_010735172.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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