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    LOC4339947 uncharacterized LOC4339947 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339947, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339947
    Gene description
    uncharacterized LOC4339947
    Locus tag
    OSNPB_060120200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339947 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1246431..1249067)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1089998..1092633)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339945 Neighboring gene uncharacterized LOC4339946 Neighboring gene uncharacterized LOC136356885 Neighboring gene uncharacterized LOC9268194

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4339947
    Names
    Os06g0120200
    P0660D08.21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1246431..1249067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786559.3 → XP_015642045.1  uncharacterized protein LOC4339947 isoform X1

      UniProtKB/TrEMBL
      A2Y8N7, A3B7V6, Q0DF23, Q5VQ96
      Conserved Domains (2) summary
      pfam04578
      Location:693 → 750
      DUF594; Protein of unknown function, DUF594
      pfam13968
      Location:284 → 494
      DUF4220; Domain of unknown function (DUF4220)

    2. XM_015786560.3 → XP_015642046.1  uncharacterized protein LOC4339947 isoform X2

      Conserved Domains (2) summary
      pfam04578
      Location:663 → 719
      DUF594; Protein of unknown function, DUF594
      pfam13968
      Location:286 → 464
      DUF4220; Domain of unknown function (DUF4220)
    Nucleotide Protein
    Heading Accession and Version

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