U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4351940 uncharacterized LOC4351940 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351940, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4351940
    Gene description
    uncharacterized LOC4351940
    Locus tag
    OSNPB_120267100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 4.1), flowers (RPKM 2.0) and 4 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4351940 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (9589503..9601695)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (9528957..9541025)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267451 Neighboring gene uncharacterized LOC136354524 Neighboring gene uncharacterized LOC112937444 Neighboring gene uncharacterized LOC9272277

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC4351940
    Names
    Os12g0267100
    Os12g0267200
    tuberculostearic acid methyltransferase UfaA1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      9589503..9601695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022169.2 → XP_025877954.1  uncharacterized protein LOC4351940 isoform X3

      UniProtKB/TrEMBL
      B9FNA2
      Conserved Domains (2) summary
      COG2230
      Location:570 → 853
      Cfa; Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]
      cl27534
      Location:1 → 428
      COG2907; Predicted NAD/FAD-binding protein [General function prediction only]

    2. XM_026022170.2 → XP_025877955.1  uncharacterized protein LOC4351940 isoform X4

      UniProtKB/TrEMBL
      B9FNA2
      Conserved Domains (2) summary
      COG2230
      Location:546 → 834
      Cfa; Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]
      cl27534
      Location:1 → 404
      COG2907; Predicted NAD/FAD-binding protein [General function prediction only]

    3. XM_015763114.3 → XP_015618600.1  uncharacterized protein LOC4351940 isoform X1

      UniProtKB/TrEMBL
      B9FNA2
      Conserved Domains (4) summary
      COG2230
      Location:570 → 858
      Cfa; Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]
      COG2907
      Location:1 → 428
      COG2907; Predicted NAD/FAD-binding protein [General function prediction only]
      pfam12847
      Location:641 → 743
      Methyltransf_18; Methyltransferase domain
      cl21454
      Location:3 → 70
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    4. XM_015763115.3 → XP_015618601.1  uncharacterized protein LOC4351940 isoform X2

      UniProtKB/TrEMBL
      B9FNA2
      Conserved Domains (2) summary
      COG2230
      Location:569 → 857
      Cfa; Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]
      COG2907
      Location:1 → 427
      COG2907; Predicted NAD/FAD-binding protein [General function prediction only]

    5. XM_015763121.3 → XP_015618607.1  uncharacterized protein LOC4351940 isoform X6

      UniProtKB/TrEMBL
      B9FNA2, Q0IP09, Q2QUD2
      Conserved Domains (2) summary
      COG2230
      Location:539 → 827
      Cfa; Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]
      COG2907
      Location:19 → 397
      COG2907; Predicted NAD/FAD-binding protein [General function prediction only]

    6. XM_015763120.3 → XP_015618606.1  uncharacterized protein LOC4351940 isoform X5

      Conserved Domains (2) summary
      COG2230
      Location:181 → 469
      Cfa; Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]
      pfam12847
      Location:252 → 354
      Methyltransf_18; Methyltransferase domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials