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    LOC4350892 disease resistance protein Pikm1-TS-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350892, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350892
    Gene description
    disease resistance protein Pikm1-TS-like
    Locus tag
    OSNPB_110606800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YNR1; YNR2; YNR3; YNR4; YNR5
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    Genomic context

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    See LOC4350892 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25365034..25376664, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23415079..23426762, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein Pikm1-TS-like Neighboring gene uncharacterized LOC112936835 Neighboring gene disease resistance protein Pik-2-like Neighboring gene disease resistance protein Pik-2-like Neighboring gene pentatricopeptide repeat-containing protein At4g19890 Neighboring gene LRR receptor kinase SERK2-like Neighboring gene mannose/glucose-specific lectin Neighboring gene uncharacterized LOC9266760

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein Pikm1-TS-like
    Names
    Os11g0606800
    Os11g0607000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25365034..25376664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761809.3 → XP_015617295.1  disease resistance protein Pikm1-TS-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y455
      Conserved Domains (4) summary
      COG4886
      Location:543 → 689
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:615 → 637
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:699 → 738
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:185 → 393
      NB-ARC; NB-ARC domain

    2. XM_015761810.3 → XP_015617296.1  disease resistance protein Pikm1-TS-like isoform X2

      UniProtKB/TrEMBL
      Q2R1F7
      Conserved Domains (5) summary
      sd00031
      Location:419 → 441
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:364 → 396
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:9 → 273
      NB-ARC; NB-ARC domain
      pfam13191
      Location:2 → 118
      AAA_16; AAA ATPase domain
      pfam13855
      Location:419 → 475
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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