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    LOC4330827 galactoside 2-alpha-L-fucosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330827, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330827
    Gene description
    galactoside 2-alpha-L-fucosyltransferase
    Locus tag
    OSNPB_020764400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330827 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32692238..32694825)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32196683..32199491)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein Os02g0764100-like Neighboring gene galactoside 2-alpha-L-fucosyltransferase Neighboring gene photosystem I chlorophyll a/b-binding protein 5, chloroplastic Neighboring gene ethylene-responsive transcription factor ERF109

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactoside 2-alpha-L-fucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xyloglucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galactoside 2-alpha-L-fucosyltransferase
    Names
    Os02g0764400
    P0539D10.16
    putative galactoside 2-alpha-L-fucosyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32692238..32694825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767818.3 → XP_015623304.1  galactoside 2-alpha-L-fucosyltransferase

      UniProtKB/TrEMBL
      A0A0P0VQ16, Q0DXA9, Q6Z7Q2
      Conserved Domains (1) summary
      cl16914
      Location:108 → 540
      O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
    Nucleotide Protein
    Heading Accession and Version

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