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    LOC4336384 BRCA1-associated RING domain protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336384, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4336384
    Gene description
    BRCA1-associated RING domain protein 1
    Locus tag
    OSNPB_040512400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336384 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26112512..26116378, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25611669..25615819, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene very-long-chain aldehyde decarbonylase GL1-7-like Neighboring gene actin-related protein 2/3 complex subunit 2B Neighboring gene uncharacterized LOC4336385 Neighboring gene uncharacterized LOC107275418

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BRCA1-A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of BRCA1-BARD1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BRCA1-associated RING domain protein 1
    Names
    BRCA1 C Terminus domain-containing protein
    Os04g0512400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26112512..26116378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778573.3 → XP_015634059.1  BRCA1-associated RING domain protein 1 isoform X2

      UniProtKB/TrEMBL
      Q01HD4
      Conserved Domains (4) summary
      smart00292
      Location:477 → 525
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:368 → 442
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      pfam13923
      Location:24 → 61
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
      cl22851
      Location:236 → 315
      PHD_SF; PHD finger superfamily

    2. XM_015778572.3 → XP_015634058.1  BRCA1-associated RING domain protein 1 isoform X1

      UniProtKB/TrEMBL
      B8ARQ8, B9FG45, Q01HD4, Q7XPZ2
      Conserved Domains (5) summary
      TIGR00599
      Location:15 → 133
      rad18; DNA repair protein rad18
      cd17734
      Location:419 → 498
      BRCT_Bard1_rpt1; first BRCT domain of BRCA1-associated RING domain protein 1 (Bard1) and similar proteins
      cl00038
      Location:530 → 622
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains
      cl17238
      Location:19 → 67
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl22851
      Location:287 → 366
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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