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    LOC4348282 heavy metal-associated isoprenylated plant protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348282, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348282
    Gene description
    heavy metal-associated isoprenylated plant protein 7
    Locus tag
    OSNPB_100209700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348282 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (7999518..8001530)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (7779246..7781276)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene bifunctional riboflavin kinase/FMN phosphatase-like Neighboring gene uncharacterized LOC112936568 Neighboring gene uncharacterized LOC107277630 Neighboring gene uncharacterized LOC107279151 Neighboring gene WAT1-related protein At4g08290

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heavy metal-associated isoprenylated plant protein 7
    Names
    Os10g0209700
    copper-transporting ATPase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      7999518..8001530
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757717.3 → XP_015613203.1  heavy metal-associated isoprenylated plant protein 7 isoform X2

      Conserved Domains (2) summary
      cd00371
      Location:1 → 57
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      pfam00403
      Location:92 → 149
      HMA; Heavy-metal-associated domain

    2. XM_015757716.3 → XP_015613202.1  heavy metal-associated isoprenylated plant protein 7 isoform X1

      UniProtKB/TrEMBL
      A0A5S6RAM7, A3AV86, Q7XG81, Q8S6Y3
      Conserved Domains (2) summary
      cd00371
      Location:32 → 93
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      pfam00403
      Location:128 → 185
      HMA; Heavy-metal-associated domain
    Nucleotide Protein
    Heading Accession and Version

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