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    LOC4347608 homeobox-leucine zipper protein HOX10-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347608, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347608
    Gene description
    homeobox-leucine zipper protein HOX10-like
    Locus tag
    OSNPB_090520500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os09g0520550
    Expression
    Broad expression in leaves before flowering (RPKM 6.8), roots after flowering (RPKM 4.7) and 5 other tissues See more
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    Genomic context

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    See LOC4347608 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24751007..24756716, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20330875..20335780, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g36980, mitochondrial Neighboring gene uncharacterized LOC9270412 Neighboring gene uncharacterized LOC136351767 Neighboring gene probable sodium/metabolite cotransporter BASS5, chloroplastic Neighboring gene DEAD-box ATP-dependent RNA helicase 7-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein ATHB-15; homeobox-leucine zipper protein HOX10-like; uncharacterized protein LOC4347608
    Names
    Os09g0520500
    P0669G04.10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24751007..24756716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304067.1 → XP_066160164.1  homeobox-leucine zipper protein ATHB-15 isoform X1

    2. XM_015756813.3 → XP_015612299.1  homeobox-leucine zipper protein HOX10-like isoform X4

    3. XM_015756810.3 → XP_015612296.1  homeobox-leucine zipper protein ATHB-15 isoform X1

    4. XM_015756812.3 → XP_015612298.1  homeobox-leucine zipper protein HOX10-like isoform X3

    5. XM_015756811.3 → XP_015612297.1  uncharacterized protein LOC4347608 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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