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    LOC4329970 uncharacterized LOC4329970 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329970, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329970
    Gene description
    uncharacterized LOC4329970
    Locus tag
    OSNPB_020613400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1004_A05.41
    Expression
    Ubiquitous expression in flower buds (RPKM 9.3), flowers (RPKM 8.7) and 6 other tissues See more
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    Genomic context

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    See LOC4329970 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24661034..24670813, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24178306..24188056, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable glycosyltransferase At5g20260 Neighboring gene uncharacterized LOC4329969 Neighboring gene uncharacterized LOC136355388 Neighboring gene uncharacterized LOC4329971

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329970
    Names
    Os02g0613400
    meprin and TRAF homology domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24661034..24670813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770939.3 → XP_015626425.1  uncharacterized protein LOC4329970

      UniProtKB/TrEMBL
      B8AFE7
      Conserved Domains (5) summary
      cd00121
      Location:385 → 519
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      pfam13863
      Location:1460 → 1554
      DUF4200; Domain of unknown function (DUF4200)
      pfam14988
      Location:1326 → 1536
      DUF4515; Domain of unknown function (DUF4515)
      cl17018
      Location:944 → 1321
      FANC; Fanconi anemia ID complex proteins FANCI and FANCD2
      cl23720
      Location:1371 → 1477
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    Nucleotide Protein
    Heading Accession and Version

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