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    LOC4340909 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340909, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340909
    Gene description
    pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
    Locus tag
    OSNPB_060326400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340909 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (12978917..12984585)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (12794247..12800359)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene indole-2-monooxygenase Neighboring gene AT-hook motif nuclear-localized protein 10 Neighboring gene uncharacterized protein At2g39795, mitochondrial Neighboring gene diacylglycerol O-acyltransferase 2D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 6-phosphofructokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables diphosphate-fructose-6-phosphate 1-phosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fructose 6-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to glucose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
    Names
    Os06g0326400
    P0652D10.35
    putative Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      12978917..12984585
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788361.2 → XP_015643847.1  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha

      UniProtKB/TrEMBL
      B8B1A6, B9FT08, Q0DCI1
      Conserved Domains (1) summary
      PLN03028
      Location:13 → 622
      PLN03028; pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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