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    LOC4336731 growth-regulating factor 12-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336731, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4336731
    Gene description
    growth-regulating factor 12-like
    Locus tag
    OSNPB_040574500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GRF12; OsGRF12; OsJ_15856
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    Genomic context

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    See LOC4336731 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (29428028..29429829)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (28921895..28924094)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene fasciclin-like arabinogalactan protein 8 Neighboring gene uncharacterized LOC136356234 Neighboring gene ankyrin repeat and zinc finger domain-containing protein 1 Neighboring gene guard cell S-type anion channel SLAC1 Neighboring gene 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in developmental process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    growth-regulating factor 12
    Names
    LOC_Os04g48510
    OSJNBa0019K04.18
    Transcription activator GRF12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419819.1 → NP_001406748.1  growth-regulating factor 12

      Status: VALIDATED

      Source sequence(s)
      AK110934, AP014960
      UniProtKB/Swiss-Prot
      A0A0P0WDW7, Q0JAV5, Q6AWX7, Q7XTX9
      UniProtKB/TrEMBL
      B8AT60

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      29428028..29429829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AWX7.1 GenPept UniProtKB/Swiss-Prot:Q6AWX7

    Gene LinkOut

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