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    LOC4330830 alpha-amylase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330830, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330830
    Gene description
    alpha-amylase-like
    Locus tag
    OSNPB_020765400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1004_A11.11
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    Genomic context

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    See LOC4330830 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32738478..32740340)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32243146..32245008)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF109 Neighboring gene uncharacterized LOC136355399 Neighboring gene alpha-amylase-like Neighboring gene transfer RNA alanine (anticodon CGC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-amylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-amylase-like
    Names
    Os02g0765400
    P0539D10.30
    alpha-amylase
    putative alpha-amylase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32738478..32740340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768164.1 → XP_015623650.1  alpha-amylase-like

      UniProtKB/TrEMBL
      A0A0P0VPT7, A3ABN7, Q6Z319
      Conserved Domains (1) summary
      PLN00196
      Location:23 → 428
      PLN00196; alpha-amylase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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