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    LOC4327077 uncharacterized LOC4327077 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327077, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327077
    Gene description
    uncharacterized LOC4327077
    Locus tag
    OSNPB_010203300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0451C06.1
    Expression
    Ubiquitous expression in flowers (RPKM 2.8), flower buds (RPKM 2.6) and 6 other tissues See more
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    Genomic context

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    See LOC4327077 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5685077..5689035, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5675608..5679569, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein BZR1 homolog 2-like Neighboring gene uncharacterized LOC136356094 Neighboring gene uncharacterized LOC136356095 Neighboring gene protein GRAVITROPIC IN THE LIGHT 1 Neighboring gene uncharacterized LOC4327080

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327077
    Names
    Os01g0203300
    P0489A05.35

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5685077..5689035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767602.3 → XP_015623088.1  uncharacterized protein LOC4327077

      UniProtKB/TrEMBL
      A0A8J8Y1N4, B8A6L0, B9ETZ3, Q0JPT3, Q5QNM8

    2. XM_015767587.3 → XP_015623073.1  uncharacterized protein LOC4327077

      UniProtKB/TrEMBL
      A0A8J8Y1N4, B8A6L0, B9ETZ3, Q0JPT3, Q5QNM8

    RNA

    1. XR_001542833.3 RNA Sequence

    2. XR_001542827.3 RNA Sequence

    3. XR_001542830.3 RNA Sequence

    4. XR_001542824.3 RNA Sequence

    5. XR_001542821.3 RNA Sequence

    6. XR_001542823.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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