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    LOC4330322 mechanosensitive ion channel protein 1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330322, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330322
    Gene description
    mechanosensitive ion channel protein 1, mitochondrial
    Locus tag
    OSNPB_020681000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 28.1), flowers (RPKM 6.4) and 5 other tissues See more
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    Genomic context

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    See LOC4330322 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28286446..28292009)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27797996..27803716)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like Neighboring gene protein REVEILLE 6 Neighboring gene uncharacterized LOC4330323 Neighboring gene brassinosteroid-responsive RING protein 1 Neighboring gene serine/threonine receptor-like kinase NFP

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mechanosensitive ion channel protein 1, mitochondrial
    Names
    Os02g0681000
    P0663F07.32
    mechanosensitive ion channel domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28286446..28292009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772164.3 → XP_015627650.1  mechanosensitive ion channel protein 1, mitochondrial isoform X1

      UniProtKB/TrEMBL
      B8AGQ0, B9F1T9, Q6EPN3
      Conserved Domains (1) summary
      cl39057
      Location:314 → 495
      MS_channel; Mechanosensitive ion channel

    2. XM_015772165.3 → XP_015627651.1  mechanosensitive ion channel protein 1, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8AGQ0
      Conserved Domains (1) summary
      cl39057
      Location:314 → 459
      MS_channel; Mechanosensitive ion channel
    Nucleotide Protein
    Heading Accession and Version

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