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    LOC4332243 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332243, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332243
    Gene description
    ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic
    Locus tag
    OSNPB_030247000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332243 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7823550..7829495, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7773863..7779860, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 2 Neighboring gene LOB domain-containing protein 30 Neighboring gene uncharacterized LOC4332244 Neighboring gene uncharacterized LOC4332245

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic
    Names
    Os03g0247000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      7823550..7829495 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777550.3 → XP_015633036.1  ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic

      UniProtKB/TrEMBL
      B8AK13, B9F6S1, Q0DTH7, Q10P51
      Conserved Domains (1) summary
      CHL00095
      Location:83 → 212
      clpC; Clp protease ATP binding subunit
    Nucleotide Protein
    Heading Accession and Version

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