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    LOC4346746 bifunctional protein FolD 1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346746, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346746
    Gene description
    bifunctional protein FolD 1, mitochondrial
    Locus tag
    OSNPB_090327300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0706E03.8
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    Genomic context

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    See LOC4346746 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (13985235..13988012)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (9652180..9654969)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 5 Neighboring gene uncharacterized LOC4346743 Neighboring gene ras-related protein RABA1f Neighboring gene pentatricopeptide repeat-containing protein At4g02750 Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene altered inheritance of mitochondria protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methenyltetrahydrofolate cyclohydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylenetetrahydrofolate dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tetrahydrofolate interconversion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional protein FolD 1, mitochondrial
    Names
    Os09g0327300
    methylenetetrahydrofolate dehydrogenase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      13985235..13988012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795885.2 → XP_015651371.1  bifunctional protein FolD 1, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A2YZX2, Q0J2K7, Q6K2P4
      Conserved Domains (1) summary
      PLN02897
      Location:65 → 386
      PLN02897; tetrahydrofolate dehydrogenase/cyclohydrolase, putative

    2. XM_015795886.3 → XP_015651372.1  bifunctional protein FolD 1, mitochondrial isoform X2

      Conserved Domains (2) summary
      cd01080
      Location:212 → 333
      NAD_bind_m-THF_DH_Cyclohyd; NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase
      pfam00763
      Location:100 → 216
      THF_DHG_CYH; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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